Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LUAD rs3800564 chr7:130125948 C/T 8.34E-6 487 18.03 22.67 21.85 KM Plot
LUAD rs3858303 chr10:132086100 C/T 0 502 21.9 20.97 2.95 KM Plot
LUAD rs4266597 chr7:158838419 T/C 1.2E-9 484 22.97 19.73 4.95 KM Plot
LUAD rs4751195 chr10:132125444 G/A 1.05E-7 501 21.87 20.97 3.97 KM Plot
LUAD rs548551 chr11:255048 A/T 2.26E-5 501 22.3 19.27 14.73 KM Plot
LUAD rs55638874 chr17:45842903 C/T 1.12E-6 504 21.82 21.93 3.97 KM Plot
LUAD rs55983816 chr9:97338875 T/A 1.02E-6 496 21.73 22.12 8.13 KM Plot
LUAD rs56320680 chr10:132082248 T/C 0 502 21.88 20.92 2.95 KM Plot
LUAD rs56808857 chr18:77988326 G/T 3.51E-6 486 21.73 22.13 11.43 KM Plot
LUAD rs568373 chr11:255014 A/G 2.26E-5 501 22.3 19.27 14.73 KM Plot
LUAD rs56856510 chr2:132247588 C/T 3.55E-6 499 21.77 23.75 11.33 KM Plot
LUAD rs57358541 chr17:45857079 C/CA 3.78E-7 495 22.02 21.4 3.97 KM Plot
LUAD rs57390430 chr17:47374886 G/A 3.35E-11 501 21.82 21.93 4.55 KM Plot
LUAD rs57940349 chr19:50097607 C/T 5.98E-6 488 21.87 23.37 14.67 KM Plot
LUAD rs59045651 chr2:42150962 T/C 1.03E-6 504 21.7 25.22 10.23 KM Plot